rs4211875 SNP Detail

Summary

• ID
  rs4211875
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84395331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGT TGCCCCAGGT TCAGAAATCA
  Y
  GCCCACATCT AGTTTGCACT TAACG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss6374523	mCV22995003_81802250	CRAMUS	CRAMUS_MOUSE	f	SNP		C	C					T
ss39449390	mCV22995003	ABI	CRAMUS_MOUSE	f	SNP		C	C					T
ss60500402	NES16526155	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	T	C		C	C	C	C		C	C	T	C		C
ss148458283	ENSMUSSNP4755651	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss325261008	CHEV_16_84598688	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs4211875					SNP	C	C	C	T	C	T	C	T	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60500402	NES16526155	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84395331 () rs orientation: forward

Symbol	Name	Function Class
Gm2477	predicted gene 2477	435 bp downstream
Rr392066	regulatory region 392066	1447 bp downstream