rs4202865 SNP Detail

Summary

• ID
  rs4202865
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:73261169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAATGAGAT ATTAGAATAT
  AAGTACAATA TCTTAGAATC TAGGGACTCT TTTGGCTGAG TTTCTGTAGG AAGTCCAAAT
  GAAATCTCTT GTATCAGTTC ACTCTGTGGT GTTACCACTG AATTGTTTAC TCCCAGACAC
  CAGTTTCTTA TTTCATTTCC CGTTGAAAGA AACTTAAGGG ACTAAGACTT GTTTTTAGCT
  Y
  GTAGTTCAAG ATGCACTTCC CTGTGGGGCA GGCAAGGTGG CTGGAGAGGG ACACAGCTGG
  ACACATGGCA TGTACAGTCA GGAATCAGAG AGACTAGTGG ATGCCTTCAG CAAACTTTCT
  GCTCCTTACA TTGTCCAGGA TCCCTGCCCT GATAATGGGT GTGGTTCATA AGTGGGAGGT
  TTCCCCAAAT CAATGAACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6365392	mCV22549089_70721627	CRAMUS	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss39436166	mCV22549089	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss148341232	ENSMUSSNP2037110	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4202865					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:73261169 () rs orientation: forward

Symbol	Name	Function Class
Gm18825	predicted gene, 18825	within coordinates
Rr518000	regulatory region 518000	1415 bp distal