rs4170260 SNP Detail

Summary

• ID
  rs4170260
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32248058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA CTTACTTTCT TTGTACTGTT
  R
  CTTTCGTTTC TTCTGGCCTG TTATT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss6332340	mCV25151209_29913419	CRAMUS	CRAMUS_MOUSE	f	SNP	A	G	G
ss39424820	mCV25151209	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss147948413	ENSMUSSNP1909619	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss325136470	CHEV_16_32429326	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs4170260					SNP	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32248058 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8190	CpG island 8190	1181 bp proximal
Dynlt2b	dynein light chain Tctex-type 2B	141 bp downstream
Gm53948	predicted gene, 53948	within coordinates
Pcyt1a	phosphate cytidylyltransferase 1, choline, alpha isoform	1681 bp upstream
Rr404779	regulatory region 404779	1515 bp upstream
Rr514694	regulatory region 514694	146 bp proximal
Rr514695	regulatory region 514695	902 bp proximal
Rr514696	regulatory region 514696	1429 bp proximal
Rr514697	regulatory region 514697	1488 bp proximal
Tssr137979	transcription start site region 137979	1367 bp upstream
Tssr137980	transcription start site region 137980	1655 bp upstream
Tssr137981	transcription start site region 137981	1745 bp upstream
Tssr137982	transcription start site region 137982	1783 bp upstream
Tssr137983	transcription start site region 137983	1803 bp upstream
Tssr137984	transcription start site region 137984	1852 bp upstream
Tssr137985	transcription start site region 137985	1985 bp upstream
Tssr140804	transcription start site region 140804	1838 bp downstream