rs4152463 SNP Detail

Summary

• ID
  rs4152463
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:3860054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGTA GCTAACAGCA CATATACTCT
  Y
  AGAGAAGACG CAGGCTCAGC TCCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6314361	mCV25291679_1674503	CRAMUS	CRAMUS_MOUSE	f	SNP	C	C	T	C	C
ss39453698	mCV25291679	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	C
ss147723015	ENSMUSSNP2944110	ENSEMBL	ENSEMBL_Sanger	f	SNP			T		C
ss325088593	CHEV_16_4042190	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4152463					SNP	C	C	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:3860054 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Trap1	TNF receptor-associated protein 1			Intron
				Noncoding-Transcript-Variant