rs4152461 SNP Detail

Summary

• ID
  rs4152461
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:3859331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGCTGGA GAGATGGCTT
  AGTAGTTAAG AGCATTGACT GCTCTTCCAG AGGTCCTGAG TTCAATTCCC AGCAACCACA
  TGTGGCTCAC AGCCATCTGA AATGGGATCC GATGCCCTCT TCTGGTGTGA CTGAAGACAG
  TGACAGTGTA CCCACATATA CAAAAAATAA ATCTTAAAAA AATTTTTTTT TCACTTATGA
  R
  AATAGTAGAA AGTAAGATAT TTGACAAGTG AGGACAGGGA TACGGAATTT AGAAACCTTT
  ACACAGAACA CAGGAAGGAC TGAGAGCACA AGCAAGCTCC ATTCTGCACA ACAAGAGCAC
  CCTAAGATGC ACGCACCCTC ACAGTGGAGC CTACGAAGCT GGAGAAAGGA TATTCTTAAA
  CGCTCTACCA TGGGCTGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6314359	mCV25291671_1673780	CRAMUS	CRAMUS_MOUSE	f	SNP	A	G	A	A
ss39442813	mCV25291671	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A
ss147723005	ENSMUSSNP4534868	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
ss325088591	CHEV_16_4041467	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4152461					SNP	A	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:3859331 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnase1	deoxyribonuclease I			1443 bp downstream
Trap1	TNF receptor-associated protein 1			Intron
				Noncoding-Transcript-Variant