rs4152459 SNP Detail

Summary

• ID
  rs4152459
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:3858934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGT GAGCCAAAAA TCAATTCATT
  Y
  TTGTCTAAGA AATCAACTCC AACCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6314357	mCV25291272_1673383	CRAMUS	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss39432750	mCV25291272	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss147722995	ENSMUSSNP916780	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
ss325088589	CHEV_16_4041070	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4152459					SNP	C	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:3858934 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnase1	deoxyribonuclease I			1046 bp downstream
Trap1	TNF receptor-associated protein 1			Intron
				Noncoding-Transcript-Variant