rs4139628 SNP Detail

Summary

• ID
  rs4139628
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  109
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123030617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTCTTGGT GTCACCAATC TATGTGGGTG AAGGATAATC
  TAGTGGTAGC CTCAGTGTCA CAGCCCCTGA GGAAAACTGG CTCTCCCTCT CCTAACCGCC
  W
  TCAGCTGCCC AAGCTCCAGC CCCTCTTCCC CCCATACAAA GATAATCAAC GTGATGCCTA
  AACATTTGTG CAGTCACCGT GACATGTGCT ACAAGATTT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J
ss5110407	WI_WGS_3_123630712	WI	MOUSE	f	SNP			A	T
ss135760923	ENSMUSSNP551228	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J
rs4139628					SNP	T	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123030617 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13775	CpG island 13775	616 bp distal
Rr584475	regulatory region 584475	542 bp distal
Rr584476	regulatory region 584476	within coordinates
Synpo2	synaptopodin 2	819 bp upstream
Tssr35497	transcription start site region 35497	846 bp upstream
Tssr35498	transcription start site region 35498	811 bp upstream