rs4138903 SNP Detail

Summary

• ID
  rs4138903
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  109
• Last Updated in dbSNP Build
  109
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:96983294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCCTGCCCA GCCCCAGTTT CTGGGGATAG CAAGGGATTT
  CTTCAGCAGG GAAGCCAGGC TCCTACTTAG GTTAANTGTG CTAAGTACTG AGCATAAAGT
  R
  CTGTGCTAAG TACTGAGCAT AAAGTGCTTT GAGTCAAAAA GGATGGTGTG GGTGCTACAG
  GTGAGGCTTG GCAGCCTGAT GAGATTTTTC CTTCAAAATC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J
ss5109678	WI_WGS_7_87076429	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J
rs4138903					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:96983294 () rs orientation: forward

Symbol	Name	Function Class
Kctd21	potassium channel tetramerisation domain containing 21	Intron
Rr400445	regulatory region 400445	1695 bp downstream
Rr651403	regulatory region 651403	1750 bp distal
Rr651404	regulatory region 651404	1754 bp distal
Rr651405	regulatory region 651405	282 bp distal
Tssr67964	transcription start site region 67964	1756 bp downstream
Tssr67965	transcription start site region 67965	1436 bp downstream
Tssr73573	transcription start site region 73573	1992 bp upstream
Tssr73574	transcription start site region 73574	1973 bp upstream
Tssr73575	transcription start site region 73575	1945 bp upstream