rs4138156 SNP Detail

Summary

• ID
  rs4138156
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  109
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56300783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACACACCA GTCATTAATC
  ACTTGGCTAG ATAACTGAAT TCAATCCCAT CTCACTGTTC TCAGTTTATA TCATGCAGAC
  AGCCATGTCT GTCAACACAA CTTCAAAGAC CATTTTTCAT AGGTTTGAAG AGACTTAGAT
  CAGAAGTAAA AATGGGTCCT TTGCAGTCTA TAGCCATTAA GGTAGGCAGT GTCTACCTTT
  Y
  TCAAGGCCTT GTCTTGAGAA GAGAAAAAAA AAAAAAAATA AAGGCTATCT CACCCCGCTT
  TAAAATTAAT GACGATAATT TCTGGAGATG TCCTTCATTT CTAAGCTAAT GGTATGGAAG
  ATCTTTTAAT TCAAACTCAA GTTGAATATT AGATCAAATA TCTCAGAAAA CTAATGTGTT
  CTTACTTTAT TCTGCTCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss5108927	WI_WGS_6_56728777	WI	MOUSE	f	SNP	C							T
ss45967843	mCV23890882	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					T	T
ss47926156	NES11648863	PERLEGEN	MM_PANEL2	f	SNP				T	T	T	T		T	T	C	T	C	T
ss133224556	ENSMUSSNP6257928	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs4138156					SNP	C	C	T	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47926156	NES11648863	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56300783 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pde1c	phosphodiesterase 1C			Intron
				Noncoding-Transcript-Variant
Rr631057	regulatory region 631057			654 bp distal