rs4137256 SNP Detail

Summary

• ID
  rs4137256
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  109
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135901663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTT CTGTTGCTGT GTCGGCTCTT
  K
  GGCATTTTCC AGCCGCATGC ATTTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss5108022	WI_WGS_4_133762657	WI	MOUSE	f	SNP	T							G
ss37777663	NES09146542	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	G	G		G	G	G	T	T	G	G	T	G
ss45676170	mCV22914107	ABI	CRAMUS_MOUSE	f	SNP	T	T	G					G		G
ss147560443	ENSMUSSNP558594	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs4137256					SNP	T	T	G	G	G	G	G	G	G	G	G	T	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37777663	NES09146542	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135901663 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15100	CpG island 15100	935 bp distal
E2f2	E2F transcription factor 2	Intron
Rr367754	regulatory region 367754	1898 bp downstream
Rr398609	regulatory region 398609	235 bp upstream
Rr602302	regulatory region 602302	1948 bp distal
Tssr39671	transcription start site region 39671	1957 bp downstream
Tssr39672	transcription start site region 39672	1925 bp downstream
Tssr39673	transcription start site region 39673	1910 bp downstream
Tssr39674	transcription start site region 39674	1773 bp downstream
Tssr39675	transcription start site region 39675	1599 bp downstream
Tssr39676	transcription start site region 39676	1492 bp downstream
Tssr39677	transcription start site region 39677	1396 bp downstream
Tssr39678	transcription start site region 39678	1174 bp downstream
Tssr44030	transcription start site region 44030	1748 bp upstream
Tssr44031	transcription start site region 44031	1305 bp upstream