rs4137242 SNP Detail

Summary

• ID
  rs4137242
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  109
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59320806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATCTCCTTG CTGAAGGCTG CATCCTCAGA GTGCATTCTC
  CACAGCGTCA CTTAGAACAG TCTTTGACTG ACTAACCAGA TAAAGGTGAA TGCGGGGGAG
  K
  GGGGAGGAGA GGGAGAGGGA GAGAGTGACA GAGACAGAGA GACAGAGAGA GACAGAGAGA
  TTCCCAATAT CCCTAGGGAA ACCTTTAGAG ACAGAGATA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss5108008	WI_WGS_4_58240790	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs4137242					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59320806 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr593038	regulatory region 593038			663 bp distal
Rr593039	regulatory region 593039			278 bp proximal
Susd1	sushi domain containing 1			Intron
				Noncoding-Transcript-Variant