rs4135919 SNP Detail

Summary

• ID
  rs4135919
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  109
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129996864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGTAGCGG GCTGGGTGTC
  ACTGTTCTTT CTTGACCTTC AGCCCCATAC CTCATCCTTA TTGAGATTTC ACAGGTCAGT
  CCCACCGACA GTTTTGGGAA GACACTATTG GCTGACAGCC TGCGTTATGA AAGCATCAGC
  TCTCCCTGGG CCTGCTGGGT GAGGAGCAGG TAAAAGCCTG GTACCTCCAT TTTTACTTTA
  Y
  GGGCCTCAAG CCCTATGACC CGAGTTTGGT CTTTCCAGCT CTGGTGGAAG AACTGATTGC
  AAGTAAGTGT CCTCCGACCT CCACATGCGC ACGACAACCT TTGAGTCAAA TTACTGCTCA
  TCTCTGCACG GAGCTGTGCC AGTCATCTAA GGAATGTTCT ACAGAACTGG GAGTCTTCCC
  CATTCAAGAC CAAAGTCAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss5106682	WI_WGS_4_127611847	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs4135919					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129996864 () rs orientation: forward

Symbol	Name	Function Class
Rr600438	regulatory region 600438	1363 bp distal
Rr600439	regulatory region 600439	503 bp distal
Rr600440	regulatory region 600440	4 bp distal
Rr600441	regulatory region 600441	749 bp proximal
Rr600442	regulatory region 600442	1431 bp proximal
Tssr39229	transcription start site region 39229	1815 bp upstream