rs4135914 SNP Detail

Summary

• ID
  rs4135914
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  109
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129996859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTCACGT AGCGGGCTGG
  GTGTCACTGT TCTTTCTTGA CCTTCAGCCC CATACCTCAT CCTTATTGAG ATTTCACAGG
  TCAGTCCCAC CGACAGTTTT GGGAAGACAC TATTGGCTGA CAGCCTGCGT TATGAAAGCA
  TCAGCTCTCC CTGGGCCTGC TGGGTGAGGA GCAGGTAAAA GCCTGGTACC TCCATTTTTA
  Y
  TTTATGGGCC TCAAGCCCTA TGACCCGAGT TTGGTCTTTC CAGCTCTGGT GGAAGAACTG
  ATTGCAAGTA AGTGTCCTCC GACCTCCACA TGCGCACGAC AACCTTTGAG TCAAATTACT
  GCTCATCTCT GCACGGAGCT GTGCCAGTCA TCTAAGGAAT GTTCTACAGA ACTGGGAGTC
  TTCCCCATTC AAGACCAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss5106677	WI_WGS_4_127611842	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs4135914					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129996859 () rs orientation: forward

Symbol	Name	Function Class
Rr600438	regulatory region 600438	1358 bp distal
Rr600439	regulatory region 600439	498 bp distal
Rr600440	regulatory region 600440	within coordinates
Rr600441	regulatory region 600441	754 bp proximal
Rr600442	regulatory region 600442	1436 bp proximal
Tssr39229	transcription start site region 39229	1820 bp upstream