rs4135861 SNP Detail

Summary

• ID
  rs4135861
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  109
• Last Updated in dbSNP Build
  109
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141460615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCACTGAGCC ATCTCTCCAG CCCCTGAGGA AACTTCTGAC
  TTGCTTCTGA TGCCTGAACA CTTATTTCCA GATCCCTACC TTGGCaaaat atatatatat
  R
  tatttttttt ttCTTTCTCT TTAAGTAACA TTTTGCTAGG NGATGTGGTG TGGCACATGG
  CCATAATTCC AGCACTCAAG AGACAGCAAG AGGAACACAG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C57BL/6J
ss5106624	WI_WGS_4_139475040	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C57BL/6J
rs4135861					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141460615 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15242	CpG island 15242	1612 bp proximal
Gm34863	predicted gene, 34863	within coordinates
Rr603869	regulatory region 603869	832 bp distal
Rr603870	regulatory region 603870	1348 bp proximal
Rr603871	regulatory region 603871	1849 bp proximal