rs4135859 SNP Detail

Summary

• ID
  rs4135859
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  109
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118743203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGG AGCAGGAGTC AGCTCTAAGG
  R
  TCTCTTCCTA CCCAGGGGCA GATTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J	NZW/LacJ	WSB/EiJ
ss5106622	WI_WGS_2_119860215	WI	MOUSE	f	SNP	G	A
ss37651787	NES09031012	PERLEGEN	MM_PANEL2	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J	NZW/LacJ	WSB/EiJ
rs4135859					SNP	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37651787	NES09031012	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118743203 () rs orientation: forward

Symbol	Name	Function Class
Bahd1	bromo adjacent homology domain containing 1	Intron
Rr563376	regulatory region 563376	1311 bp distal
Rr563377	regulatory region 563377	860 bp proximal
Rr563378	regulatory region 563378	1982 bp proximal