rs4135623 SNP Detail

Summary

• ID
  rs4135623
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  109
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130848647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCCAGCT CAGTGACTCC
  CTGGTTCTCT CAGCAGGTGG CTTAATCTTC TCTTTCACTG AAATAACAGG TGCCAGGGAG
  GAAGACAGAC ATCCACGCCT GCCCTGAGTC CTCCAATCAG CTCCGTCTTT GAGCCTCTTC
  TGTCCCACTT CACTTTTGCT TAAAAATTAA TTAATTAATT TAATTAAATT TTAAAAGAAA
  W
  TTCCCGGTCA CTAGACCACT ACAAAATTAT CTACAAATAT TCATGGCATG CCTAACTATA
  GGACAGGCCT GTGTGTGGTG TAAAACCACC TGCTAACTAG AAGCACTCTG AAGGAGAAGT
  CAGATCTGCA AACAAACCAG AATCCAGCCC TAGGATTCAA GTCTCAGCTT GGGATTAGTG
  AGGCCAGCAA AGGTTAACCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss5106383	WI_WGS_3_131610631	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs4135623					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130848647 () rs orientation: forward

Symbol	Name	Function Class
Gm65588	predicted gene, 65588	within coordinates
Rr585257	regulatory region 585257	within coordinates
Rr585258	regulatory region 585258	1982 bp proximal