rs40113390 SNP Detail

Summary

• ID
  rs40113390
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152021582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCAGTCCA GCCAGCAGCA
  CAGAGCGGCA CTGACGAGCC ACTGCTCTCT GGACTGGGGA GGAGGCGTGC TGCCCTCTAG
  TGACTCAACA GCACAGACTG GGGAGGAGGC GTGCTGCCCT CTAGTGACAA CAGCACAGTC
  AACAAGAAGC CCCTCAGAGG TAGGAAATGT CCATGCTGTT AGGAAAGAAC TGACCCAAGC
  Y
  TTCATCTCAT TGAGGAAACA TAACGTCCAT CCATGAAATG TGGTTACACA TCTGCTGTAA
  CTAAGCCAAG GGTCAGATGT CGGTACAGAA GAGTTTAGAA ACATGGAGGG CTCAGCGGCT
  AAGAGAGCCT GCTGCTCTTC TAGAGGATCC AGGTTCAATC CCCAGCACCT GCACCACACA
  CATATGAAGG AAGAAAATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51059800	NES13424276	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C		C	C	C		T
ss321028629	CHEV_3_151978909	CHEVERUD	SCREENING_POP	f	SNP										C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs40113390					SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51059800	NES13424276	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152021582 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Miga1	mitoguardin 1			Intron
				Noncoding-Transcript-Variant
Rr587523	regulatory region 587523			677 bp distal
Rr587524	regulatory region 587524			within coordinates
Rr587525	regulatory region 587525			113 bp distal
Rr587526	regulatory region 587526			69 bp distal
Rr587527	regulatory region 587527			329 bp proximal
Rr587528	regulatory region 587528			621 bp proximal