rs40026255 SNP Detail

Summary

• ID
  rs40026255
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:79996343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGCCCGC ACAATAAGGA
  ATGCCAGGTA CTCTGAGGAT TTTCCTTTCC TTTTCTTTTT CTTTTTTTTT TTTTTTTCTT
  TTTTAATCCC TTCTCCTCTC TCTCTCTCTC TCCCTGTCTC TCTCTCTCTC CCTCTTTTTT
  TTCCCACAGA GAAGTTGGTT ACCTCCGAGA TGAGCTGTAG CTCTTTTCAC AGATTGCCAA
  W
  TTACTGCTAA TGTGCCCCTA GTGAATTATA CAATGGTCCT CAGAGCCTAG AGGCCCTCCC
  CCTCCGGCAC CCCCCCCCCC CCGCGGCTTC CTTTTCCCTG CCCCTTCATC CCACCCCGTG
  CTGATTTTTT TTTTAAGTAT ACGTATATCT ATATTATTTG TGTGTGTGTG TCTGCCTGTC
  CTCTCCGGGG AAGTTTACAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51705495	NES14809927	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs40026255					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51705495	NES14809927	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:79996343 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm4409	predicted gene 4409			within coordinates
Lrrtm4	leucine rich repeat transmembrane neuronal 4			Intron
				mRNA-UTR
Rr632526	regulatory region 632526			302 bp distal
Rr632527	regulatory region 632527			441 bp distal
Rr632528	regulatory region 632528			within coordinates
Rr632529	regulatory region 632529			294 bp proximal
Tssr57230	transcription start site region 57230			415 bp downstream
Tssr57231	transcription start site region 57231			363 bp downstream
Tssr57232	transcription start site region 57232			330 bp downstream
Tssr57233	transcription start site region 57233			281 bp downstream