rs40000233 SNP Detail

Summary

• ID
  rs40000233
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131509268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAATATA TATCCCTTGT
  GGGTGTATGG GGCTACTGTA AACAATTTTC TTTTGATATT TACCATTTTT GTTTAAGTCC
  ACTTAAGAAC TCCCACAGGA TAAAACATTA AATTAGTTTA TCTGAGTTCT TTTCTATATA
  CAAATTATCA GCCTTTCCCA TACTGCAATG TAAATCTAAT TGATCCCATT TTCAACAACT
  S
  TAAGATTTAG TTACATATTA AATATTATGT AGGTTTTCTT CCCCTCTGAG TCTGATATTT
  TAATCAAAAA GGCTATTTCA TTGAAATTTA GGCATTTGAC AATGTTGCCC AACTCAAAAT
  GTATAGAATA TAGGCAGAAT GGTAGATACT GATTGTCATT ATTGATTTCC TGACTGAAGG
  ACCTCCCATA TTCTCCGTAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51638846	NES14654102	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C		C	C	C
ss135905493	ENSMUSSNP3261370	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs40000233					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51638846	NES14654102	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131509268 () rs orientation: forward

Symbol	Name	Function Class
Rr375748	regulatory region 375748	1002 bp downstream
Rr585381	regulatory region 585381	301 bp distal