rs39972943 SNP Detail

Summary

• ID
  rs39972943
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:18433030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACTTAGCT CCTTCACTGG
  TGGCCGGCTT CAGTCTGTGC TCCATGCTTT AAGTTTTAAA GGTGACCCTA CTGATATTTC
  CCTTTCGTGT TTAAATTTCT GCTCTTTAGA GCCAGTAGGA TCTGCCAATC CCTAATGTCT
  GACGAGAGTA GCACAGATTG CTCCAGAGTG CCAACAGAGC TCTGACCCTA ATCATGAATC
  R
  ACTTTAGCCA TGATAATGAA AAAGCAATTC TTTCATAACT ATATACAGCC ACGACAACAT
  CTAGTCCTTT GTGGGACTCC CAGACTGAGC AACCTCACAA TGCACTCATG CAATGGGAAC
  TTTAATGTCC CATGTGGTGT AGAAACCATC TGGGCTCAAG TGTTGGAAGA CAATACCTTC
  TCCAAAGAGG TACATGCCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	WSB/EiJ
ss51250491	NES13802214	PERLEGEN	MM_PANEL2	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	WSB/EiJ
rs39972943					SNP	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51250491	NES13802214	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18433030 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cttnbp2	cortactin binding protein 2			Intron
				Noncoding-Transcript-Variant
Gm43843	predicted gene 43843			1786 bp upstream
Rr626922	regulatory region 626922			1516 bp proximal
Rr626923	regulatory region 626923			1711 bp proximal