rs39944857 SNP Detail

Summary

• ID
  rs39944857
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:123155992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACCTGGAA AAGTAGAGGA
  GCTGACCCGA CCTTTGCCCC TCCAGTGTTA GCCAGGTTGC CTGGAATGCC AAATTCACCT
  GCTTATCCCT AAAGTGAGCG TGAGGGAGAG TCTCTCAAAA GGCCTGGTGG AGATCAAGCC
  AATCCTAACT TCATGATGAA AGGGTGTAGG CCAGGTGCCT GTAACACATT GAGGATAAGC
  K
  TCTTTGAGGT TAGTTTTCTC CTGTGTAGAG ATGGGCAGAT CTTGTTCTCT CCTTGACTTG
  TATGAGGGTT CCTTACGAGG GCCCATGGGG AGCTGAGGGA TTTCAGGACC TGATGCTGTA
  TCTGGTCTGC TGGTGGGACT CTACAGATAG AAAACGAAGG GAACCCGAAT CTAGGTTAGA
  TGTGCATTTT ACAGTGTCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss51195017	NES13812741	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs39944857					SNP	G	G	G	G	G	T	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51195017	NES13812741	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123155992 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Orai1	ORAI calcium release-activated calcium modulator 1			Intron
				Noncoding-Transcript-Variant
Rr620049	regulatory region 620049			56 bp distal
Rr620050	regulatory region 620050			1427 bp proximal
Tssr48747	transcription start site region 48747			1689 bp downstream
Tssr53185	transcription start site region 53185			1972 bp upstream
Tssr53186	transcription start site region 53186			1949 bp upstream
Tssr53187	transcription start site region 53187			354 bp upstream
Tssr53188	transcription start site region 53188			1015 bp downstream
Tssr53189	transcription start site region 53189			1041 bp downstream