rs39941608 SNP Detail

Summary

• ID
  rs39941608
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:130125060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAATGTT GGCAGTCCTC
  CTCTGTTGTC TTCTAAAGTC TGTGAGTTGT ATGAACACAG GAGACAAGTA GGCTCAAAAT
  ACTACAAGTA GTATTAAAAC AGTTAAATAT ATCCAGAGCT GGCCCAACTG AGGCAAAATG
  GGAGAAACTG GATAGATATG AGGGCACTGT GTTATTTTGC TGTTTTTCTA CCCAAAGAAA
  W
  TGGGCAAATG TGTGATTGCT TTTGAATAAC AATAATAGTG GGGGGCTGGT GAGATGGCTC
  AGTGGGTAAG AACACCCGAC TGCTCTTCTG AAGGTCCTGA GTTCAAATCC CAGCAACAAC
  ATGGTGGCTC ACAACCATCT GTAAGGAGAT CTGACTCCCT CTTCTAGAGT GTCTGAAGAC
  AGCTACCGTG TACTTACATA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51631205	NES14652335	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs39941608					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51631205	NES14652335	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130125060 () rs orientation: forward

Symbol	Name	Function Class
Col25a1	collagen, type XXV, alpha 1	Intron
Rr585157	regulatory region 585157	1004 bp distal
Rr585158	regulatory region 585158	553 bp distal