rs39920511 SNP Detail

Summary

• ID
  rs39920511
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:96487117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGTTTCACA TGGCAGGTGT TGGGGACAGA
  GAGAGTAGAG AGATTAAACT TTCTATCTCT GAGGAAACTG AGACTGTGGG CTGTGGGACC
  TAATAAAGTT CCTGGCAAAC TCCTAGTGCT TTCGCAGAAG CTGCATGTCC CTTTGTTCCT
  Y
  ATAAATACat ccagtttcac cagcaccatt taacaaaatg agcgcacctc ctccaatgtg
  tgtgcttggt gcctctgtca gaaacccctt gcctgtaact attcagatgt atttccatgt
  ttttatattg acacattgtt atatttgtca                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss51309948	NES14502725	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C		T	C	C	T
ss319853059	CHEV_1_98455969	CHEVERUD	SCREENING_POP	f	SNP									C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs39920511					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51309948	NES14502725	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:96487117 () rs orientation: forward

Symbol	Name	Function Class
Gm70795	predicted gene, 70795	475 bp downstream