rs39888715 SNP Detail

Summary

• ID
  rs39888715
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:22192062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTATACA ACAAAATTGA
  AACTAAATTT AAAGAAAGAC TAGATGAACC TGTGAAGAGG AATGCATTTA AATGTGTTAT
  TGAATATTAT AATTTGCACT AATATAGCTG GGAAATTGTG AGGGAGACAT TGGTGTTTCC
  ATTTGTATTT TGTAAGCGTC ACAGATGAAA CAGCCTGGTA TCGGCGCTTA AAATGTTGAG
  R
  TACCCAGATG AGGAGGAGAA GAGGAACAGA AAGTGTGCGT GGAGGAGTGA GCCAGTGGTG
  TAATGGGCTT GCTGTGCACT CCTTGTCACG TTGGCCACCA GGGAATCTAG TAGACAGTGA
  AATGGTGACC AGCTTTGCAG TAAGCCCTTG AGCTATAGCA TGCTGTTAAC AAAGAAACTA
  TCCCTCTGGT TTGTCTAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51433284	NES14434416	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39888715					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51433284	NES14434416	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:22192062 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr574211	regulatory region 574211			within coordinates
Rr574212	regulatory region 574212			1954 bp proximal
Tbl1xr1	Tbl1x/y related 1			Intron
				Noncoding-Transcript-Variant
Tssr843	transcription start site region 843			1228 bp downstream