rs39878733 SNP Detail

Summary

• ID
  rs39878733
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:119687291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAACATTCA AGCTTAAATG
  CGCAAGTCAC ATATATTTTA AAAGGGATTT CAAAACAAGG GATTTGCCTG GCTTTGCTGA
  TGACTATTTT CAGGTTAGTG TTTGCACGAG ATTTCCGCCA TGTAAGGCAC AACTGATCCC
  CTCGTCTCGT CGGTGGTCAG AGAACAGGGC TATCATTACT GACAGCCTTT TCTCTAAGCC
  S
  GGCTCTGATC TGAGCTGGAG CAGACATTGA CTTTCATCAG GGCTTTCTGG ATCGATGATT
  CGGATGGTTC TTGGATAGCT ACGCCGAGTT CCCCCACACT GTTTGCAAGT CAAAGCTGCA
  TCTCCTTCCC CCCAGGTGGA ATTTCTCAGT TCAAGGATTC ACTTCTCAGC GGCCTCCAGC
  TCCCGAGGTT GGCAGCTGAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51014974	NES13913084	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39878733					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51014974	NES13913084	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:119687291 () rs orientation: forward

Symbol	Name	Function Class
Gm66375	predicted gene, 66375	within coordinates
Gm66384	predicted gene, 66384	within coordinates
Rr583949	regulatory region 583949	within coordinates
Rr583950	regulatory region 583950	477 bp proximal