rs39868308 SNP Detail

Summary

• ID
  rs39868308
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:117863869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTCTGTA CACATACACA
  TGTTCATAAA TATGTATGTA TGTATGTATG TATGTATGTG TGTATGTATA TATGTGTGTG
  TAAGTGTGTG TATAACTGTG TATGTGTGCT GTGTGTGTAT GTTTCCGAGA GCAAGGAAAG
  TTCAGTCAGC ATTGCCTCAC ATAACATCCT TCCCACTGGG TCTCCTCTGT CTCACTATAG
  Y
  TCCCACACAT CATGGCTGAA GAGTTCACAG GAAAAGTCTT TCTTTTCTAG AAGTGCTGCA
  TCATCATAAC CCTGTAAACT CTGCCCCAGT GCTGAAGTCT AACTTGGTTT CGAGGCTGAA
  GGTCAAAGGC ATGAGTCGGG TGACTGTGCT TCTCCCTAAA ATAGCCCACA GAAGATAGCT
  CTCCTTGCTG TCCTGTCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51597206	NES14669676	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	C	T	T	T		C	C	C	C		C
ss135695988	ENSMUSSNP4113947	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
ss320900850	CHEV_3_117773138	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs39868308					SNP	C	C	T	T	T	T	T	C	T	T	T	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51597206	NES14669676	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:117863869 () rs orientation: forward

Symbol	Name	Function Class
Gm65635	predicted gene, 65635	within coordinates
Rr583881	regulatory region 583881	within coordinates
Rr583882	regulatory region 583882	212 bp proximal