rs39834657 SNP Detail

Summary

• ID
  rs39834657
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:18819374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTGCTTG TGGGTGCAAA
  AGATTGAACT TAAGGTCCCA CACATTCTAA CAGGCTCTAC CGCGGGATTA TAGCCTCTGT
  TTTATAATAT GTTTAAGGAA AAGGACAAAC TCTTCTGAGA GCCTCTTAGC ATCACCAGCA
  TAGTTTCAGA TAATCAAAAC TCTGTCAGTA TGCTTTAAAA TGAAGAAGTG ACCTGTGGTG
  R
  CTATTACATT CTATTACAGT GTCTTATCAT TGGTGACAGA GACCATGAAA TAGTCCTCTT
  TGGAACTTCA GCATGTGGGA AAAAATACAT ACTACGTGCT CAGTGTGTGG CTTTAAAACT
  CTTCCTGGAG GAATTTCTGA AATTGGCTTT TAACTGTGGC CTCTATTCAC ATCACAGCCC
  TGCCACCTAG TGGCCAATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51245887	NES13801902	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	G	G	G	G	A	G	G	G	G
ss133041773	ENSMUSSNP1835145	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39834657					SNP	A	A	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51245887	NES13801902	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18819374 () rs orientation: forward

Symbol	Name	Function Class
Rr626951	regulatory region 626951	51 bp proximal
Rr626952	regulatory region 626952	177 bp proximal