rs39798956 SNP Detail

Summary

• ID
  rs39798956
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8104718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGCTGCT ACTTCCCTGC
  TAGGATGTAT TATAACCTGA AATGTTGAGC TAAAAGAAGC TTTGTTCTGT AAGTTGCTTT
  TTGTCAGGAT ATTTTATTAC TGAAACAGAA ATAAAACCAA AACACCATAA TGTAACCACA
  TATTTCCCAT CATTGCAAAT TAGCTACCTA AACAAAACTC TCATTAATAG CCTAGTGGGA
  R
  AATAAAGTGT CCCAATTGTT ACCCAGAATG CAGCCTTTTA TACTCGGTCC TAAAGCATCA
  CTGAAGATAA ATGTAATTTC CGTGATAAGT CAGGAGCCTT TAAATATTGG GTTTTTATAT
  TCCAGAGTTT ATCATAACAT GCTTCATATG TGTGGTGATT TGCCTACATG TATGTCTGTA
  TACCACCACA TTCATGCCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51554649	NES14866339	PERLEGEN	MM_PANEL2	f	SNP	G			A	A	A	A	G	A
ss132961639	ENSMUSSNP4217324	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs39798956					SNP	G	G	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51554649	NES14866339	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8104718 () rs orientation: forward

Symbol	Name	Function Class
Col28a1	collagen, type XXVIII, alpha 1	Intron
D6Mit348	DNA segment, Chr 6, Massachusetts Institute of Technology 348	389 bp proximal
Rr626348	regulatory region 626348	210 bp proximal
Rr626349	regulatory region 626349	1088 bp proximal