rs39788109 SNP Detail

Summary

• ID
  rs39788109
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:30566177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTTCTCA CCTCCCCATC
  CACCCTTCTC ACTTCCCCAG TTCCGTTCGC CTAGCCCCCA AGGAGTCTGC CAATACCTGA
  GTTGGATCTG GTGGAAGTTT TTAAGAAAGG AAGGGACCAT GTTGCCAAAC TCCGAGATTA
  AGAACAAGAC CCACTTGGAC TCTGGACTTA TTTGCGCTTT GAAAGAATAA ATCTTGTGGC
  Y
  GACTGTAGGG TAGGGTGGTT TCAGTAAAGG GCGAAAGACA GAACCGAATC AACAGTCTCC
  AAATCACCAG ATGCAAAGAT CTGTCTTTTA AACTTTTACA GAAAGTTGGG ATATTAGGGC
  AGTGGTAGGT GGCTGGGGTA CCCACTCCTT CTGGCGTTTA AAGTCCCCGT CCTCATCTTT
  CAGTGAACTG GTCTTTTACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss51450022	NES14442997	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs39788109					SNP	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51450022	NES14442997	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30566177 () rs orientation: forward

Symbol	Name	Function Class
Rr574785	regulatory region 574785	1805 bp distal
Rr574786	regulatory region 574786	within coordinates
Rr574787	regulatory region 574787	438 bp proximal