rs39781311 SNP Detail

Summary

• ID
  rs39781311
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:76040255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGTACAC ACTAAGTGCT
  CAATAAAACC CAGCGCCTTA CAAATCCATT TGATGAATAA CTGAACAGAA AAAAGAAGCT
  AAAATTAGTA GGAAAAGAAT TATCAAGAGC AAGGAGCAAA ATCCCCACTA GGAAGAAAAG
  ATTCTCACAG GATAGATAAC ACTGCCACTT GAGTTTTTAT TTAGGACACT CTGACCTTGG
  W
  AGTGACCTGG ATTCAAAAAG GAGTGTGGCT GCCTATATTA GCCTGACCTG ACAATGGGGC
  AGTCAGAACA GCAAGGTGCA GCCAGAAGAG CCAAGAGCAT AAGAAAACAC AGCTTGCCTG
  AAGAAACCAA ACTCCAAGAA GGGGGTCTCT CAGCTTCTCA CTTTGTCTCC ATCCACTGCA
  GAAGATCCAG GCCAAATCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51745802	NES14733876	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39781311					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51745802	NES14733876	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:76040255 () rs orientation: forward

Symbol	Name	Function Class
Gm73081	predicted gene, 73081	within coordinates
Rr613503	regulatory region 613503	879 bp distal
Rr613504	regulatory region 613504	474 bp proximal
Rr613505	regulatory region 613505	892 bp proximal