rs39773013 SNP Detail

Summary

• ID
  rs39773013
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:31093116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCCCTAA GAGCAGGCAT
  TTGTGCTCCT GGCTCTTCCT TCTATCACTG TTAATGCTTT GTGTTTTGTT TTTATCTTAG
  CCTTGTAGAA ACAATTAAGC CACAGCTCTG GGTAAGAGGC AGAGTGGGAG AGGTGAGAGA
  CGAGGCGATC AGCCCTGGAT TTCCTCCGTC GCTAGTCCAC CTTTCCGCAA TGCTTACACA
  Y
  GGGAGGACAA ACAGAAGCAG AGCAATCTCC GAGGGGATGT TTATGGCAGA TTAGGGACAG
  TCAGGGAAAG CAAGCAGAAA TTCTCCCAAG GTGGAGTATT AAGCAACACC CAGCATCATC
  CTACAAAGCA TGGTTCATAT CCACTGATTA GACCGAGAAT TAGGCTCCAA CAGATGCATG
  GTGAAGCTGA CTCTGCCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51260123	NES13794003	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39773013					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51260123	NES13794003	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:31093116 () rs orientation: forward

Symbol	Name	Function Class
Gm56937	predicted gene, 56937	1756 bp downstream
Lncpint	long non-protein coding RNA, Trp53 induced transcript	within coordinates
Rr627889	regulatory region 627889	906 bp distal
Rr627890	regulatory region 627890	232 bp proximal
Tssr60155	transcription start site region 60155	1361 bp upstream
Tssr60156	transcription start site region 60156	1130 bp upstream
Tssr60157	transcription start site region 60157	1077 bp upstream