rs39761217 SNP Detail

Summary

• ID
  rs39761217
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:98080573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCTACAG TATCTGCATA
  GGATCATTAT TCTACATGAA TTGTATCTCC CCACTCAATG CAACTTTGTG AACATTTCTG
  TGTTCTCTCT CTCTCTCTCT CTCTCTCTGT GCTTTTTTTC CAACCTGCCT ACAGATGGGT
  TTCCTGTGAT TGCCTTGAAC CACGAAGACA CTTTCATAGG GTTTCTTGCT CTTCTTTAAT
  R
  TGCAGAGGTG CATAGTCCCA GTGGCAGCAG CCACGAGTAC CTTGACAGTC AGCCCTTCTC
  ATGATGCCCA TCGGTGTTCT TCCTTTATCG AGTTCAGATC TGTGGGCTTC CTCCAGAAAC
  ACAGCCACAA TTGAGTTGCT TAGCACTGTA TTGGTCTGTT TCATGCTGCT ATAAAAAAAT
  ACCTGAGGTT GTGTATTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss51380899	NES13737589	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs39761217					SNP	A	A	A	A	A	A	A	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51380899	NES13737589	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:98080573 () rs orientation: forward

Symbol	Name	Function Class
Rr379828	regulatory region 379828	148 bp downstream
Rr635261	regulatory region 635261	1012 bp proximal
Rr635262	regulatory region 635262	1674 bp proximal
Rr635263	regulatory region 635263	1800 bp proximal