rs39667829 SNP Detail

Summary

• ID
  rs39667829
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:31091967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGAAAAGAG ATGAAACAAA ACAAAACAAA ACAAAACAAC
  CCTAACAGTC TCTCAGCTTG GGACCCACAC ATGCAGGGCT AAGTACGAAA CAGAGCAAGA
  W
  GACAGAATTT CCCTCTGAAA ATTTCTGCTC CTAGGTATTT AGGCTGATTT ACACTTTATG
  TAATCTTGAT GGCTCAATCA GGAAGTGAGA ATTTTAAGTG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51260139	NES13793995	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs39667829					SNP	T	T	T	T	T	T	T	T	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51260139	NES13793995	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:31091967 () rs orientation: forward

Symbol	Name	Function Class
Gm56937	predicted gene, 56937	607 bp downstream
Lncpint	long non-protein coding RNA, Trp53 induced transcript	within coordinates
Rr627885	regulatory region 627885	1993 bp distal
Rr627886	regulatory region 627886	1860 bp distal
Rr627887	regulatory region 627887	1287 bp distal
Rr627888	regulatory region 627888	890 bp distal
Rr627889	regulatory region 627889	within coordinates
Rr627890	regulatory region 627890	1381 bp proximal
Tssr55448	transcription start site region 55448	1252 bp downstream
Tssr60154	transcription start site region 60154	1550 bp upstream
Tssr60155	transcription start site region 60155	212 bp upstream
Tssr60156	transcription start site region 60156	within coordinates
Tssr60157	transcription start site region 60157	55 bp downstream