rs39648313 SNP Detail

Summary

• ID
  rs39648313
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:82925506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATACAGG ACAGTGATGG
  AACTCTCAGT AGCCTGTATG ACAACCTGGG CTCATTCCCC GGCACCCCCC CCCAAAAAAA
  AAAAGTTCTA GTTCCATGAC TTCAAGTCAT ACAACTGTAA GGAAGATGTC TTGTGTTCAC
  AGGCAAGAAT AATGACTTAT TGACCAAATG GGAGAGTTTT GAATATACCT CTGAGATGCT
  R
  TACCTTTCAC CAGTCCTTTA ATGTGGCTGT AATTTATGGG CAATTTCAGG ACTGTGCGTG
  TGAACTAGCC AGGTGTGGTG ACCCATGTTT ATAATCTTAG CACTTGGGGC GATGGGTCTA
  AGACAGGCAG ATCATGAGTT CAAGACCAGC CTAGGCTATA AAACAGAACA GTATCTCAAG
  GGGAAAAGGA ATGGGGAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss50990208	NES13925962	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs39648313					SNP	A	A	A	A	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50990208	NES13925962	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82925506 () rs orientation: forward

Symbol	Name	Function Class
Rr578819	regulatory region 578819	1947 bp proximal