rs39643075 SNP Detail

Summary

• ID
  rs39643075
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:79998524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCTATAGT TCTGTGATGT
  TATGAGACTA AGGAGGAAAG AATGAGGTCT AAGCAGCAAG CATGGAGCAC TAAAGGAAGT
  AAGATTTTTA ATTGTTAAAA TGTGGTCTTA AATGTCCTAT ACGGTTCTTA CCTTAAGACA
  GGACATCCCT GCTCTGGGTG AGCCAGGGGT ACCAATAGTG ACTGTCAGTG TGACACCCCT
  R
  ATCTGGACGA GCCTGTGGTG CTGTGTGGCT TCTGTTTGAC AGGGTGCATC TGTGTTCTCT
  TTGCTCTTGT AGGTTTCCGT CTAATCACGC AGCTGAAAGG CATGAGTGTG TTTCTGGTGC
  TATTTCCCAC CCTGCTGCTG GTTATGCTGA CGGGGGCTCA GAGAGCTTGC CCAAAGAACT
  GCAGATGCGA TGGCAAGATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51705483	NES14809931	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39643075					SNP	A	A	A	A	A	A	A	A	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51705483	NES14809931	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:79998524 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17566	CpG island 17566	1313 bp proximal
Gm4409	predicted gene 4409	within coordinates
Lrrtm4	leucine rich repeat transmembrane neuronal 4	Intron
Rr632528	regulatory region 632528	1888 bp distal
Rr632529	regulatory region 632529	1263 bp distal