rs39624568 SNP Detail

Summary

• ID
  rs39624568
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:112187966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGTTTGTC ATCTGGGAGC
  TGCACTGGCC TGGCTCCAGG GGGAGTGTTA CGCTGGGAAA GTGCAACGCT TGGATCCCAT
  ATTACCAGGG CATTGCCCAA TGGGAGAGAG AGCCATCGTA AGATGTAGGG GGAGGACTGT
  ATTATACTTG TGCTCTCATA GTATGTAACC TTGTAGGCAC TGGTACCTGA AGAGACATTA
  M
  GTCATTCTGA CAAAGAAACA GGAAGTCGGT ACCTTTCTGT TCAGTTTACT TACCTTCACC
  AGCGTTGGAT GCCCTTGAGA GAGCCCAGGT TCAGCTCCCA GCACCCACTG GCAGTTCCCA
  GCAGTCTTTA ACTCTAGTTC CAGGGTATTT GATGCCCTCT TCTGGTCTCA ATGGAGTACT
  GCATATACAT GATGCAAGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51832902	NES14763373	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs39624568					SNP	A	A	A	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51832902	NES14763373	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:112187966 () rs orientation: forward

Symbol	Name	Function Class
1700054K19Rik	RIKEN cDNA 1700054K19 gene	within coordinates
Rr636309	regulatory region 636309	312 bp distal
Rr636310	regulatory region 636310	within coordinates
Rr636311	regulatory region 636311	149 bp proximal