rs39600704 SNP Detail

Summary

• ID
  rs39600704
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85987718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTGCATCC AGCGTCAGGG
  TTCAGTTGCC TAGACATCCA CCCTTCTAAG GTCACATGCT GACTCTCCCA GGGCCACACC
  TAGGACGTCG AGTGAAGTTG AAGCCAACAC TGAACTTTGC TTTATGAACT GAGCTGCTGT
  TCCAAGGTCG TCTAGACTTG TGCGACTAAC ATGACATCAA TGAACTCCTT GGGTAGAGAA
  W
  GATTCCTGAT GGGACCCTCA AGGGCAGCCA GGGTTGGCAA GCGTTGCCCC AGTCATTCCT
  GCCTGAGAAA GGTGAGCTCT CACCCGTCTC CACAGTCAAC ACTCAACAAA TGTATCTTAC
  ATGGGAGCCA TCCTGGTGAC CAACGCATCA CTACAGTGTG CCATGTTCTT ACCACTGGCC
  CTGTGGATAG CTCCAGTACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51757786	NES14802165	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39600704					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51757786	NES14802165	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85987718 () rs orientation: forward

Symbol	Name	Function Class
4930553P18Rik	RIKEN cDNA 4930553P18 gene	1383 bp downstream
Gm66378	predicted gene, 66378	within coordinates
Rr633312	regulatory region 633312	472 bp distal
Rr633313	regulatory region 633313	575 bp distal