rs39583758 SNP Detail

Summary

• ID
  rs39583758
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:119656344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTTCTTT CCTTCTTCCT
  TTTTCCTTCT CTTCTTCCCC CAATGCCACA CCCCCCACTT TCTATACACT AGCCAATGTA
  CATCACTTAA AAACTGAACT TATCAGAAAC TTGCTCCCTC CAGCGCAGAC TCTTTCCAGC
  TACAACAATT GTTTTTTGCT TCTGGATAAC GTTTTGGAGG GCAGCTGGCA CGTTCTACTC
  Y
  ACACAATGCA GTGATACATA AGCAGGATAA GAAGACCGAG AGCCGCCCCA TAGAGTAGAC
  TCTTGTGTGG TCCACTGCTC AGTTCTGCAT ATACTCATTG TGGGCACTCA TCTATCTGTT
  CTTCCATTCA ACAGTTACAG TGGCTTTCAT AGACCATGGC AGTGTGAGTG TGTGTGTGTC
  TGTGTGTGTG TGTGTGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51015270	NES13913527	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39583758					SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51015270	NES13913527	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:119656344 () rs orientation: forward

Symbol	Name	Function Class
Rr583946	regulatory region 583946	182 bp distal