rs39576384 SNP Detail

Summary

• ID
  rs39576384
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:57510975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGATAATT TTTGATATGT
  ATGTATGCAT ACATACATGT ATGTGAGCCC GGGGGAAGTG CAGGCCAGTG CAAGCAGGCA
  GAGGCCTTTA GTGGTCAAGC AACATCATCG GCCCGATTTT TAACACTCTT AAACTCCAAA
  TTTCTTTACC ACCATCAACA ACAAAACCCC AGTGCACCCC AATAAACAAC TAAAATCATC
  Y
  GAAAACCTCA GAAATGTATT TTAGGAAATC CGCACTCTTG ATGCCTTTAT CGCCTTTTAG
  GAGGAAAGGA AATGTTAGTT TACTGGAGAA AAGAAAACAA CAAAACGGTC AATAACTCCC
  TTCGGTTGTA TGTGAGAGTC TGTTTTCATA GGCGAAGTGA GAATACAGTA TTGAAAAGTA
  AGTGTTACTC AACTCTGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51315127	NES13763471	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs39576384					SNP	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51315127	NES13763471	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57510975 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17483	CpG island 17483			765 bp proximal
Cpgi17484	CpG island 17484			1541 bp proximal
Gm45193	predicted gene 45193			within coordinates
Ppm1k	protein phosphatase 1K (PP2C domain containing)			Intron
				Noncoding-Transcript-Variant
Rr399669	regulatory region 399669			1427 bp upstream
Rr631141	regulatory region 631141			127 bp proximal
Rr631142	regulatory region 631142			1426 bp proximal
Tssr61156	transcription start site region 61156			1378 bp downstream
Tssr61157	transcription start site region 61157			1420 bp downstream
Tssr61158	transcription start site region 61158			1432 bp downstream
Tssr61159	transcription start site region 61159			1487 bp downstream
Tssr61160	transcription start site region 61160			1509 bp downstream