rs39560197 SNP Detail

Summary

• ID
  rs39560197
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:72973080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTACCATA CTCATCTGGT
  TACTATGTTA CATTTCTACT GGTAAGGTCT GTGACTGTTT TAAAGTAACA GCCCATTTTA
  ACCTGCTTCT GTTCTCTGTG AAGGCACCAG ATTTCTGTTT TGCAAAGCTG TCTTTGAGTT
  AAGTATCAAA GATGTGGAAA TTTCTGGTAG CAGCCTGTGT GATGATTATT TTACTTTGAG
  W
  TGGATCGCCA AGAAGTGGAA AATTAAATTG AACTCTTGTG GAATTTATGC ATGTATGAAA
  TAATTGTATT TTTATTTTAT TGTAAAACAT GAAAGCAATA AATTTTATAG AAATTCACAG
  GGATCTGAAT GATACCCTCT ATGAACGTTT CTGACGATCT CTTCTTCTCT CTCTCTCCTC
  TCTCTCCTGT CTCTCTCCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss50986094	NES13919810	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs39560197					SNP	A	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50986094	NES13919810	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:72973080 () rs orientation: forward

Symbol	Name	Function Class
Gm20754	predicted gene, 20754	604 bp upstream
Gm38353	predicted gene, 38353	219 bp upstream
Rr578299	regulatory region 578299	134 bp proximal
Rr578300	regulatory region 578300	527 bp proximal
Rr578301	regulatory region 578301	615 bp proximal
Tssr29555	transcription start site region 29555	549 bp upstream
Tssr29556	transcription start site region 29556	585 bp upstream
Tssr29557	transcription start site region 29557	598 bp upstream