rs39520667 SNP Detail

Summary

• ID
  rs39520667
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152724384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAGATATT AGCTGAGCTT
  GGCTTTGGAT GGCTGGCTGC TGAGGTTGGT TTTTTGTTGT TGTTGTTTTT TGTTTTTTTA
  TTTTTGTTTT TAGCAAAACT TTTCCAAGGG GGCATACATT GTTCTTATGA TAAGAAGACC
  AATGAAAGTG TTTACTTAAG GAATTAAAAT TTGGATAACA ACACATGGGC TGAATGTTTC
  W
  AAATTCTTAA TTTATACAAC GTCCTGGTTA GGTTTGTTTG TTTTGTTTTT GTCAAGCTCA
  AATTACCTGG GCACCTTAAC TGAGAAAAAG TGCCTACATC AGACTTCCTG TATGCCAGTC
  GGTAGTTCAT TTTATTAATT AATATTGATG AGGATGGGCT CAATTCATGT GGTAGGGGTA
  ACAGGGTGGG GACAGATGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss51062468	NES13894521	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	A	T	T		A	T	T
ss136105674	ENSMUSSNP382594	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						T
ss321029596	CHEV_3_152681711	CHEVERUD	SCREENING_POP	f	SNP											A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs39520667					SNP	A	A	A	A	A	A	A	A	T	T	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51062468	NES13894521	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152724384 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Rr587644	regulatory region 587644	359 bp distal