rs39517190 SNP Detail

Summary

• ID
  rs39517190
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:36215015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCTGTGG ATCTCTTCTT
  TTTCTTCCTA TTACTCAGCA TTGCCTTTTG CGGAGCAAGC ACAAATCCAG ACATTGTGTA
  AACCAATCGG TTTGATCAAA TCTTGGCAGT AGGTCAGATT TTGATGAGGG TTGTAGTTTG
  CCAAAACCTT CTCCAGAGGG TAAATTGTAT TTCTTTACAT TTTGTGATTT ACACATAATA
  Y
  ACCATTCCTC ATCAAGATCA CAGAGTAGTG AATTTTATGC CTTCCACCCA CCATGCTATG
  CTTATTCTAA TGTTGTTATT CCCTGTGTTA TGGAAGTGAC ACGCCTTGAT CTGCATTTCC
  AAAACTCAGT GATCACTTGT ATGGTGAGAC GATTTAAAAT CATCAATCCA TGTATTTTTC
  ATTTGGCTTG TTTGCTTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51281853	NES13778698	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39517190					SNP	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51281853	NES13778698	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:36215015 () rs orientation: forward

Symbol	Name	Function Class
Gm57759	predicted gene, 57759	493 bp upstream
Gm67063	predicted gene, 67063	within coordinates
Rr628531	regulatory region 628531	756 bp proximal