rs39489354 SNP Detail

Summary

• ID
  rs39489354
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87654521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGA AGGCCCGCCA CTGGACGGCC
  Y
  TTCTCCCAGC TTTCTTCCCA CATCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51576188	NES14670738	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39489354					SNP	C	C	C	C	C	C	C	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51576188	NES14670738	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87654521 () rs orientation: forward

Symbol	Name	Function Class
Lrrc71	leucine rich repeat containing 71	Intron
Pear1	platelet endothelial aggregation receptor 1	1883 bp downstream
Rr579535	regulatory region 579535	1399 bp proximal
Rr579536	regulatory region 579536	1780 bp proximal
Rr579537	regulatory region 579537	1988 bp proximal
Tssr33946	transcription start site region 33946	1319 bp downstream
Tssr33947	transcription start site region 33947	1342 bp downstream
Tssr33948	transcription start site region 33948	1363 bp downstream
Tssr33949	transcription start site region 33949	1385 bp downstream
Tssr33950	transcription start site region 33950	1405 bp downstream