rs39476396 SNP Detail

Summary

• ID
  rs39476396
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87471178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCACACC CACTCCAACA
  AGGCCACACC TCCTAATAGT GCCATTTCTT ACGGGCCAAG CATTCAAACA TATGAGCCTT
  TAGGGGCCAC TCCTAGATAA ACCACCACAG ATGCTTAGAC ACAATAGCAG GTGTTCACTC
  CCCTGAGTTG GTGGCAGTGT GGATAATCCC TACCCTCTTC CTTTCATTTC TTAAGGAATC
  K
  TCATGTGTCT CCTTCTGTCA GATGCACTCT ATGCTGTTAG GTGGTTCTGT CCATGTAGAA
  ATGTCATTGA ATGAACTTGC AGGAAAGCAG ATGGCAGAGA TCAATCATGG TGAATGGCAG
  CAGGATGCTA TCAAGCAAAC ACATGGTGCA CAAGGCTGCT AACCATGCTG TATACTGCTG
  GTACTTTGTT GCAAGTAGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51577325	NES14673262	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39476396					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51577325	NES14673262	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87471178 () rs orientation: forward

Symbol	Name	Function Class
Rr579522	regulatory region 579522	1057 bp distal
Rr579523	regulatory region 579523	1291 bp distal
Rr579524	regulatory region 579524	1493 bp proximal