rs39451747 SNP Detail

Summary

• ID
  rs39451747
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:82960839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTTCTCT GCTTCTGTTG
  AGACCAACCA CCACAAGCTT TAGGGATGTC TTTGGAGTTC AGGACTGGTT CTACAGTGGT
  CCTGTCAGTA TGCTGGACGC GACAGGTGAC CAAGAGTGGG TATGCTAGCC CTACCTCCTG
  CTAGTCCTAT CAGAGTCTCT TAAGCAGATT GGAATCTGTA AAGGAAGTAA GCGGAGAATC
  M
  GATCCACTGA CTTGGTTTCT CATTCACAGC AGCATTGCAG AGGGAAGACT CAGCTACTGC
  AGTCTCTGCT TAGACTTTCG ACTCTTCAGT TAAACCTGTC AGGCCTTCTG CTTGTCCCAG
  TTGTACCAGG CCACATTCTA CCTCACTGAT CATTGCTCAA CAGGCAAGGT ACACTAATTG
  AAGGAGATTG AAAGGATTTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50989844	NES13925176	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39451747					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50989844	NES13925176	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82960839 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13295	CpG island 13295	1513 bp proximal
Rr397732	regulatory region 397732	1717 bp upstream
Rr578826	regulatory region 578826	within coordinates
Rr578827	regulatory region 578827	365 bp proximal
Rr578828	regulatory region 578828	1500 bp proximal
Rr578829	regulatory region 578829	1909 bp proximal
Tssr29713	transcription start site region 29713	1984 bp upstream