rs39444968 SNP Detail

Summary

• ID
  rs39444968
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:129053456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTATAGCA CATTAACATT
  CTATTGACCA TGCATGGAAC CATGGTCTGA AAACATAAAT CAAAATAAGC ATTTCCTTTT
  TTTCAAAGTA TTTCTCTCAG GCATTTCATC AGTGCAACAA AAGTCTGCCT AGCATAGAAA
  AATGGCGTCT TACCTGGGGG CTGATGTGAC TACACGCTTG TCAAAGGTTC AGTGTTCCTG
  Y
  TCATGGTTTG TGGGAGGAAT TTAGAAAAGT TTGGAGATAT GGACCAGTGG AGATCTAGCA
  TCTGTAAGCT GAGCTTAGAA GACCATTTTG ATGGGTTTTC AGAAGTCCAC AATGCAAATA
  GGAAGGGAGA CAGTAAAGAT GGTGCTCACA ACGACTTGAT GAGAACAAAC ATTCTATTGA
  GAGTTGAATT AGAAGCCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51624446	NES14657212	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39444968					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51624446	NES14657212	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129053456 () rs orientation: forward

Symbol	Name	Function Class
Gm65501	predicted gene, 65501	within coordinates
Rr584980	regulatory region 584980	1120 bp distal
Rr584981	regulatory region 584981	1060 bp distal