rs39396314 SNP Detail

Summary

• ID
  rs39396314
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146886901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTTTCTG TACATACCTT
  GAACCGGAGA CAAGTTATCC AAGCAGGGGA GCCAGTTTGG TGAAAACAAA GATCCATTTT
  AAAAATTGAT ATAGCTCGTC TACTGTTGGA AAATAAAATG GCCATTGCTT ACTTAGACAA
  AGAAACAAGG GTACTATAGC TTCATTTACC ATACAAAGCT CTCACAGAGA GCAGCTCTGA
  R
  AACAGACATA GAGCTTCCTG CAGTGACGGG CATATCAGTG GGGATTTTAT TTGTCTTACT
  GTAAGTGCAG AACCCTAGTC TATTGATGGC TTTAATTCTA CAGGCACTGG TGGTTTGCAC
  TTAGCCTGAG AAATAGCATT AACTGAGCTT CTCTGATGGG CTCGGTGTGT TTGGCTGTGC
  AATGAATGGC GTCCTATCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51050488	NES13900877	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39396314					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51050488	NES13900877	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146886901 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13926	CpG island 13926	848 bp proximal
Gm65492	predicted gene, 65492	within coordinates
Rr375882	regulatory region 375882	within coordinates
Rr587132	regulatory region 587132	within coordinates
Rr587133	regulatory region 587133	135 bp proximal
Rr587134	regulatory region 587134	1449 bp proximal
Rr587135	regulatory region 587135	1636 bp proximal