rs39389481 SNP Detail

Summary

• ID
  rs39389481
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82937889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAAGGGTGA ATAGATATTT GAAAAGAACT CGCTCTGTCC
  CGTTTGCCCT CCACTGGCTG AGACCTTGGC TTCAGCTTGG AGGAGGCCCT TCAGCCAGAG
  Y
  TTACAGGATT AGAGCCATTC TCCTTCCCCA TTCAAATTCT AAAATGGATC CAAATAGTTT
  GGATCCTCCA CACTTCCTTG TCCCTCCACA GCTTCCTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50990082	NES13925796	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	T	T		T	C	T		T
ss135410289	ENSMUSSNP6567758	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss320820862	CHEV_3_82834504	CHEVERUD	SCREENING_POP	f	SNP											C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs39389481					SNP	C	C	C	C	C	C	C	C	T	T	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50990082	NES13925796	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82937889 () rs orientation: forward

Symbol	Name	Function Class
Fga	fibrinogen alpha chain	Intron
Rr375250	regulatory region 375250	within coordinates
Tssr917	transcription start site region 917	1116 bp upstream
Tssr29662	transcription start site region 29662	1985 bp downstream
Tssr29663	transcription start site region 29663	1968 bp downstream
Tssr29664	transcription start site region 29664	1485 bp downstream
Tssr29665	transcription start site region 29665	1446 bp downstream
Tssr29666	transcription start site region 29666	1410 bp downstream
Tssr29667	transcription start site region 29667	1367 bp downstream
Tssr29668	transcription start site region 29668	373 bp downstream
Tssr29669	transcription start site region 29669	323 bp downstream
Tssr29670	transcription start site region 29670	286 bp downstream
Tssr29671	transcription start site region 29671	248 bp upstream
Tssr29672	transcription start site region 29672	351 bp upstream
Tssr29673	transcription start site region 29673	379 bp upstream
Tssr29674	transcription start site region 29674	428 bp upstream
Tssr29675	transcription start site region 29675	438 bp upstream
Tssr29676	transcription start site region 29676	448 bp upstream
Tssr29677	transcription start site region 29677	465 bp upstream
Tssr29678	transcription start site region 29678	544 bp upstream
Tssr29679	transcription start site region 29679	588 bp upstream
Tssr29680	transcription start site region 29680	611 bp upstream
Tssr29681	transcription start site region 29681	713 bp upstream
Tssr29682	transcription start site region 29682	736 bp upstream
Tssr29683	transcription start site region 29683	779 bp upstream
Tssr29684	transcription start site region 29684	804 bp upstream
Tssr29685	transcription start site region 29685	845 bp upstream
Tssr29686	transcription start site region 29686	911 bp upstream
Tssr29687	transcription start site region 29687	1009 bp upstream
Tssr29688	transcription start site region 29688	1033 bp upstream
Tssr29689	transcription start site region 29689	1059 bp upstream
Tssr29690	transcription start site region 29690	1089 bp upstream
Tssr29691	transcription start site region 29691	1135 bp upstream
Tssr29692	transcription start site region 29692	1151 bp upstream
Tssr29693	transcription start site region 29693	1182 bp upstream
Tssr29694	transcription start site region 29694	1215 bp upstream
Tssr29695	transcription start site region 29695	1241 bp upstream
Tssr29696	transcription start site region 29696	1254 bp upstream
Tssr29697	transcription start site region 29697	1278 bp upstream
Tssr29698	transcription start site region 29698	1415 bp upstream
Tssr29699	transcription start site region 29699	1497 bp upstream
Tssr29700	transcription start site region 29700	1510 bp upstream
Tssr29701	transcription start site region 29701	1542 bp upstream
Tssr33800	transcription start site region 33800	520 bp downstream
Tssr33801	transcription start site region 33801	865 bp downstream
Tssr33802	transcription start site region 33802	1001 bp downstream