rs39374401 SNP Detail

Summary

• ID
  rs39374401
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127743209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGAACGGG ATATGTGCTC
  CTTCTTCGCT GATCCAGGCT GCTAAGCCTC TCAGTCTCAG ATCTCAGAAG CTACCTCTGC
  CTGATAGCAG GGAGGACCCT CTCTGTGTAC ACTGTCCTTA TGTCCAGCCA CTGCCTTCTG
  AAGATCTGGC TTCTGATTTT TCAGTCCCTG TAACTTGCCT CTTTCTCCAC AGAAGTCTTA
  M
  TGCATGGACA TATTTTTGAG CACGAAGACT CTTTGTCTTG ACTTCGTTTT TCTTCCCTGG
  ATGGACCCTT CATGACATCA ACTCGGGAAA AAGGATCCTC TGAACTGGCT GAGCCCTCAG
  TGGGTTCCAT AGTGACTGTC TTGCGTAGAA CCTATAGGCC CGTGTTAAGT GTCTAGATAC
  GCACCTTTCT CTTAAAACAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51616814	NES14661495	PERLEGEN	MM_PANEL2	f	SNP	C			C	C	A	C	C	C		C	C	C		C
ss135875957	ENSMUSSNP6300490	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A				C
ss320958555	CHEV_3_127652478	CHEVERUD	SCREENING_POP	f	SNP										C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs39374401					SNP	C	A	A	C	C	A	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51616814	NES14661495	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127743209 () rs orientation: forward

Symbol	Name	Function Class
9830132P13Rik	RIKEN cDNA 9830132P13 gene	within coordinates
Rr398010	regulatory region 398010	239 bp downstream
Rr584909	regulatory region 584909	940 bp distal
Rr584910	regulatory region 584910	141 bp distal
Rr584911	regulatory region 584911	439 bp distal
Tssr31619	transcription start site region 31619	743 bp upstream