rs39334955 SNP Detail

Summary

• ID
  rs39334955
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:32032321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGGGTTC TTTCCAGCTT
  CTGGATATTA TAAATAAGGT TGCTATGAAC ATAGAGATGG CTCAGTGGTT AAGAGTACTG
  ACTGCTCTTC CAAAGGTCCT GAGTTCAAAT CCCAGCAGCC ACATGGTGGC TCATGCAAGA
  TTCTTGTTCA TCCTGCTCCA TATTTAACTA CTTCCATATG GAGGAAGAGA TCTTGCAGGC
  K
  TTTCCAGTGC CTTGCTCAGT TACAGCTCAG GAAGATCTGT AATCCTTCTT CAGTGCCCAC
  AATGGAAACA TAACCCATTG TTGTTCCAAA TCTACAGACC TGGGTCTTCT GAATGTTCAA
  GGAGGCTGAA GGGTACTGCT TCTCTCAGCT TCTCTGATGC CTTGTAGCCT TGGCTCTGAC
  TCACAGTAAC AGATAGCCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51586584	NES14850111	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39334955					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51586584	NES14850111	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:32032321 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700012A03Rik	RIKEN cDNA 1700012A03 gene			Intron
				Noncoding-Transcript-Variant
Gm67015	predicted gene, 67015			1833 bp downstream
Rr628076	regulatory region 628076			1092 bp proximal